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Published bioinformatics software and resources

Long noncoding RNA analysis

  • iSeeRNA: accurate and extra-fast lincRNA/mRNA classifier

  • Sebnif: comprehensive novel lincRNA filter pipeline for RNA-seq data

  • NAMS: Noncoding Assessment in Magnoliophyta Species

Bisulfite sequencing data analysis

  • Methy-Pipe: integrated pipeline for BS-seq data analysis

  • BSviewer: lightweight, genotype-aware, nucleotide-level visualizer

Noninvasive prenatal testing (NIPT) using plasma DNA

  • COFFEE: control-free and cross-platform algorithm for T21 test

  • FEMER: noninvasive reconstruction of placental methylome

Others

  • GeneCT: Generalizable cancerous-status and tissue origin classifier for tissue biopsies

GeneCT.png

  • ODS: Integrated analysis platform for genetic testing

  • mTFkb: fundamental annotation of mouse transcription factors

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